Usage

To generate interactive html reports with fastqc-rs, simply pass the path to your fastq file with -q and capture the generated html file from stdout.

fqc -q path/to/my_sequence.fastq > report.html

Arguments:

Parameter	Default	Description
-q –fastq	-	The path to the FASTQ file to use
-k	5	The length k of k-mers for k-mer counting
-s –summary	-	Creates an output file for usage with MultiQC under the given path